Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQLRPGSPAAPVVYTGPLDRYFDYAEGRLGWRTLDFEVEVLPIGDFQGTAVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYSRFAEDDDEPYYPINTEADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPHLRDGVPLLQDGA |
| 1WAM Chain:A ((6-360)) | ---------ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEK-GD----DPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDLQREFI-----VEERTHYDHVFYSGPLDAFYGYQYGRLGYRTLDFK-KFTYQGQYQGCAVMNYCSVDVPYTRITEHKYFSPWEQH--DGSVCYKEYSRACEENDIPYYPIRQMGEMALLEKYLSLAENET---NITFVGRLGTYRYLDMDVTIAEAL---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168525 for 2836 contacts (-59.4/contact) +
2D Compatibility (PS) -37716 + (NN) -19214 + (LL) 2676
1D Compatibility (HY) -36400 + (ID) 7900
Total energy: -267079.0 ( -94.17 by residue)
QMean score : 0.517
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