Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
4M3B Chain:A ((25-214))
------------------------RELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE-----DRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
4M3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104124 for 1347 contacts (-77.3/contact) +
2D Compatibility (PS) -20236 + (NN) -15865 + (LL) 668
1D Compatibility (HY) -24800 + (ID) 9200
Total energy: -173557.0 ( -128.85 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4M3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M3B-query.scw
PDB file :
Tito_Scwrl_4M3B.pdb
: