Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDL-TQLPTGSVVTGQVQDLPI-DAPILQMEVVRVDAEGVGLRFLSEA
3ZJA Chain:A ((80-125))
-----------------------------QLVFKSGGNHLMFEKLKQQPKQGQSVAVELH-FAHSDPVAVKLPVKAA-------------
General information:
TITO was launched using:
RESULT:
Template:
3ZJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14100 for 165 contacts (-85.5/contact) +
2D Compatibility (PS) -4653 + (NN) 67 + (LL) 2820
1D Compatibility (HY) -800 + (ID) 350
Total energy: -17016.0 ( -103.13 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_3ZJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZJA-query.scw
PDB file :
Tito_Scwrl_3ZJA.pdb
: