Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHP-MPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHR-LIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA
1O4T Chain:A ((56-131))
------------------------------------------------ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH-DN-GKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVIILL----------------
General information:
TITO was launched using:
RESULT:
Template:
1O4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23572 for 486 contacts (-48.5/contact) +
2D Compatibility (PS) -7562 + (NN) 5169 + (LL) 1732
1D Compatibility (HY) -400 + (ID) 600
Total energy: -25233.0 ( -51.92 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1O4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4T-query.scw
PDB file :
Tito_Scwrl_1O4T.pdb
: