Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGGDLVEQDEFLLRPGEERRI---ERTLDEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP
4A1R Chain:C ((7-113))
------------------------PSRYSLVFDADRQVNAAA--QPAPIKIRVLLLRSDAEFMDADFFSLQNDAKSVLGNSLLDSDQFFLTPGQTGKKLGGQSALD--ARYIGVIAEYQNLDGKTWRISLPLPEPTFYKVWQFSPDELEAHIVAGVS
General information:
TITO was launched using:
RESULT:
Template:
4A1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19144 for 660 contacts (-29.0/contact) +
2D Compatibility (PS) -10746 + (NN) -4671 + (LL) 1964
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -44947.0 ( -68.10 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_4A1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A1R-query.scw
PDB file :
Tito_Scwrl_4A1R.pdb
: