Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MAPIFPAAPPGSTGSRAVRCRSTERGGPDMELLNATPLAAAYNQGLDAEGRESLVVIAKGSFDLPLDGREARLLDEQQTLLMVDEFYGEPGFSAPRRECEFVPFKPFCDVLVLGSAQAPGGRPVQQLTAGIRVGRVSKALTVHGPRQWEPGLLGAGAGVAQPFQSQDISYASAFGGSHASPDNPGFMDCYMANPAGCGWFPRSADTAEIVGTPMPATEKLGEPVDSPHGRFTPMALGPLGRHWQARVGFAGRYDDAWLAERFPFLPADFDERYFQSAPADQWTD-HLRGGEEVLLLN------LTGE-ERAAFRVPRREVPVTFFLKKGGHETA-QARIDTLLVDCDARRVEVTWRIRRPLKRNLFEIAQVLVGSKSAAWWRARELGKDYYPSLAALARSRQAEEDEA------- |
| 3AU7 Chain:A ((20-402)) | HMRVWVGIDTYLAVLAMERVEREL-GKVIGFPRLIRLNPTINGAVSFLVEVDDVGELVDVVNEVIIEPGAVFVDEELAVKLKPFADKAIKDVLQIDEALFVIGKYFI------------------------------PHLRHKKG-------------------RGLIGALAAVGAELEDFTLELIAYRYPERFGT-------------------EREYDEESFFDMDYELYPQTFDNVDWCNDVVVCIPNTPCPVLYGIRGE-----SVEALYKAMESVKTE-PVDRRMIFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKDTINLEKIQIVELAEGSERELQPGFYEVPPSARRHLSKPLIRMNVEGRHIFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AU7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17119 for 2488 contacts (-6.9/contact) +
2D Compatibility (PS) -33380 + (NN) -4331 + (LL) 3288
1D Compatibility (HY) -6000 + (ID) 2200
Total energy: -59742.0 ( -24.01 by residue)
QMean score : 0.073
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