Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEISTEEVSSMNVQAGSPQWIASCGRENASSGTQGSF-----DCYDGNTKMGTFSWDD------PWKSGATNTWSFTPASADYAGITSGGNATGTD-IGEVTLTLGRFS
4CU6 Chain:A ((496-582))
---------------------------------------------------LRAKHPKWLIYGSETSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQFIW---TGTDYIGEPTPWHNQNQ
General information:
TITO was launched using:
RESULT:
Template:
4CU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 15579 for 365 contacts (42.7/contact) +
2D Compatibility (PS) -8112 + (NN) -3692 + (LL) 3900
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: 4425.0 ( 12.12 by residue)
QMean score : -0.011
(partial model without unconserved sides chains):
PDB file :
Tito_4CU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CU6-query.scw
PDB file :
Tito_Scwrl_4CU6.pdb
: