Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHPSHVRALCASLCLGAGLPVHAGHVHAGQGFLEDAKASLTARNFHLHRNFVGDASQGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGKGTAGTQLLPIHDDGRPADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPL-GDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGSNTRFDENRLIVSYPLSLL |
2Y0K Chain:A ((8-389)) | --------------------------------LVEDSHASLELRNFYFNRDFR--GARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLD-------------------QDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSA-NRIGGRSDAFDFAGGDYRLTPALT-ASLHQGRLKDIYRQTFAGLVHTLDLG--RSLKSDLRFARASEDGGFR--ELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAG-SDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNV-ARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFAND--LDENRLILSYSLALW |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 18779 for 2816 contacts (6.7/contact) +
2D Compatibility (PS) -36274 + (NN) -802 + (LL) 1464
1D Compatibility (HY) -27600 + (ID) 8100
Total energy: -52533.0 ( -18.66 by residue)
QMean score : 0.105
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