Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRH-FRVLRYDARGHGASSVPPGPYT---LARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAW-----------LGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGAA
2OCK Chain:A ((10-253))
----------NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKW------------VDGIRQF-----KHLPDGNIC-------RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ--
General information:
TITO was launched using:
RESULT:
Template:
2OCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159254 for 1979 contacts (-80.5/contact) +
2D Compatibility (PS) -23677 + (NN) -5205 + (LL) 2416
1D Compatibility (HY) -13600 + (ID) 3150
Total energy: -202470.0 ( -102.31 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2OCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCK-query.scw
PDB file :
Tito_Scwrl_2OCK.pdb
: