Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
4EUG Chain:A ((5-220))
-----------LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPQPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLP
General information:
TITO was launched using:
RESULT:
Template:
4EUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100656 for 1747 contacts (-57.6/contact) +
2D Compatibility (PS) -23331 + (NN) -14776 + (LL) 600
1D Compatibility (HY) -20000 + (ID) 6000
Total energy: -164163.0 ( -93.97 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4EUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EUG-query.scw
PDB file :
Tito_Scwrl_4EUG.pdb
: