Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFS--PGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPME----KAKDGKVLV------------HGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREFLAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 2GQ9 Chain:A ((2-228)) | ----TQSLFQPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAG--LIVSEGTQIS-PTAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRV----THPD-NIDGQQPISSSTLKAENVKVFVDNEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLFGGGEKGLTDYPTYQA--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89273 for 1662 contacts (-53.7/contact) +
2D Compatibility (PS) -22571 + (NN) -10362 + (LL) 1928
1D Compatibility (HY) -18400 + (ID) 5350
Total energy: -144028.0 ( -86.66 by residue)
QMean score : 0.515
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