Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIAN----TRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATC---AAAYRD----ALPDSVEPEEGRR-----IEP-PRCP--ACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
2NYR Chain:A ((14-270))
-----KFFAKAKHIVIISGAGVSAESGVPTFRGA-GGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTE--------RFHFQGPCGTTLPEALA-----
General information:
TITO was launched using:
RESULT:
Template:
2NYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144420 for 1856 contacts (-77.8/contact) +
2D Compatibility (PS) -24995 + (NN) -13324 + (LL) 1656
1D Compatibility (HY) -17600 + (ID) 5350
Total energy: -204033.0 ( -109.93 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2NYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYR-query.scw
PDB file :
Tito_Scwrl_2NYR.pdb
: