Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
1PBY Chain:B ((284-322))
------------------------------------------------------------------------------------------SVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRDE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7329 for 193 contacts (-38.0/contact) +
2D Compatibility (PS) -4147 + (NN) -3278 + (LL) 4408
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -12496.0 ( -64.75 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1PBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PBY-query.scw
PDB file :
Tito_Scwrl_1PBY.pdb
: