Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVIIALAALGLLMLAAYRGYSVILFAPLAALGAVLLTDPSAVAPTFTGVFMEKMV---GFIKLYFPVFLLGAVFGKLIELAGFSRSIVAAAIRLLGTRQAMLVIVLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIPATIALGAFSFTMDALPGTPQ-IQNIIPSTFFGTHAWAAPWLGTLGALFVFAVGMLYLRRQANKARRNGEGYGSDLRNEPETADDLRLPNPWLALSPLVLVGVANLLFTHWIPQWYGQVHTLQLAGMATPLQTEVGKLTAIWAVQAALLLGILL---VLASGFAAIRSRLAEGTRSAVAGSLLAAMNTASEYGFGAVIASLPGFLVLADALKSIPNPLVNEAITVTLLAGITGSASGGMSIALAAMSDTFIAAANAAQIPLEVLHRVAAMASGGMDTLPHNGAVITLLAVTGLTHREAYKVIFGITLIKTLAVFFVIGLFYATGLV |
4P5F Chain:A ((8-374)) | ------LTPTEAAVLRELR-----LHRPQLPLDTLLFTDPNKDPDDVVTYTIAKQLQADGFLRLTDVVVTLGD-----ADMRSQRAQLAKGVFDRLA-----LPDVRVARGQDYPMTSTQAREHSKFLAEGAALRAA-------PDAVHTDGVRAMCERLATSPHKLGMVVIAGM----TDASALLAEAGDLVREKVASITIMGGIDPARDADGLVQPDTRAYNNATD------------------------IHAARALYRRAQQLGI-----PLRILTKEAAYKAAVPPAFYEGIARNGHPVGEYLRDVQKNALKGLWEGIQANLIPGLD--TAWFFRTFVAGALSFDAIWPQVTKL-----NLYDPLTLLAALPGTARLLFQ--------------------PTPMHREGASP------------------VEHVGHAEVVRPEKARLLLSALAKAALV--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -349303 for 3114 contacts (-112.2/contact) +
2D Compatibility (PS) -35591 + (NN) 135 + (LL) 8676
1D Compatibility (HY) -6400 + (ID) 3400
Total energy: -385883.0 ( -123.92 by residue)
QMean score : 0.253
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