Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRD---PQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLV-TGKDEEAVLNECERGEDVAKHRYQAALEKS---LPAEIHQVIERQYQGVLRHHDRVRALRDARA
1TJO Chain:A ((24-172))
--ADRAEQCVDALNADLANVYVLYHQLKKHHWNVEGAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAE----ASVDVEDEDVYDIRTSLANDMAIYGDIIEATREHTELAENLGDHATAHMLREGLIELEDDAHHIEHYLEDDT
General information:
TITO was launched using:
RESULT:
Template:
1TJO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9764 for 1097 contacts (-8.9/contact) +
2D Compatibility (PS) -15812 + (NN) -10073 + (LL) 528
1D Compatibility (HY) 1200 + (ID) 950
Total energy: -34871.0 ( -31.79 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_1TJO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TJO-query.scw
PDB file :
Tito_Scwrl_1TJO.pdb
: