Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEFIDLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSKPLGCYGDGGAIFTNDDELATAIRQIARHG-QDR-RYHHIRV---GVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVN-----NISVYAQYTVRMD------NRESVQASLKAAGVPTAVHYPIPLNKQ------PAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN |
| 1MDX Chain:A ((24-379)) | -------------------AAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG-RHIGARGTAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGL---GRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADL----PFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTL-----TLPDTEWNSERICSLPLFPDMTESDFDRVITAL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223407 for 2789 contacts (-80.1/contact) +
2D Compatibility (PS) -35847 + (NN) -20052 + (LL) 2368
1D Compatibility (HY) -24400 + (ID) 6200
Total energy: -307538.0 ( -110.27 by residue)
QMean score : 0.594
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