Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
3SGX Chain:A ((19-238))
-----------RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-----------LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN--------------------
General information:
TITO was launched using:
RESULT:
Template:
3SGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134467 for 1575 contacts (-85.4/contact) +
2D Compatibility (PS) -23321 + (NN) -14691 + (LL) 2820
1D Compatibility (HY) -21600 + (ID) 5850
Total energy: -197109.0 ( -125.15 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3SGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SGX-query.scw
PDB file :
Tito_Scwrl_3SGX.pdb
: