Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEAD-CAKGFLFDGFPRTIPQAE----ALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
1DVR Chain:A ((5-193))
IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70277 for 1287 contacts (-54.6/contact) +
2D Compatibility (PS) -19898 + (NN) -9331 + (LL) 2132
1D Compatibility (HY) -16000 + (ID) 4900
Total energy: -118274.0 ( -91.90 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1DVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVR-query.scw
PDB file :
Tito_Scwrl_1DVR.pdb
: