Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPT-P--NDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQG------DATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1S28 Chain:A ((3-126))
MKNSFDRLIDGLAKDYGMPGFPEKKHEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDNLDSNACQSLLRLNEFNLRTPFFTVGLNEKKD-GVVHTRIPLLNLDNVEMRRVFEALLNLSGEVK
General information:
TITO was launched using:
RESULT:
Template:
1S28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46960 for 760 contacts (-61.8/contact) +
2D Compatibility (PS) -12297 + (NN) -5354 + (LL) 104
1D Compatibility (HY) -7600 + (ID) 900
Total energy: -73007.0 ( -96.06 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1S28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S28-query.scw
PDB file :
Tito_Scwrl_1S28.pdb
: