Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAADRVMQSYGRCCA-STGFFDDFYRHFLASSPQIRAKFATTD--------MTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHS-RAALDIRPELYDLWLDALLMAVAEHD-RDCDAETRDAWRDVMGRGIAVIKSYY
3D1K Chain:A ((5-141))
-KDKAAVRALWSKIGKSSDAIGNDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDDL-KTGLMELSEQHAYK--LRVDPSNFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERY
General information:
TITO was launched using:
RESULT:
Template:
3D1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79333 for 917 contacts (-86.5/contact) +
2D Compatibility (PS) -13451 + (NN) -8327 + (LL) 468
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -107543.0 ( -117.28 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3D1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D1K-query.scw
PDB file :
Tito_Scwrl_3D1K.pdb
: