Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFSWSEILLELLAVAVLFFGVHWSLRHAKTLDQASMLPFADDEEVARRVERETGRSRTGCGCPGRCQGDCRHWDKNWPA
1V54 Chain:M ((16-35))
-------AIGLSVTFLSFLLPAGWVLY-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9308 for 75 contacts (-124.1/contact) +
2D Compatibility (PS) -2154 + (NN) -2861 + (LL) 2912
1D Compatibility (HY) -1200 + (ID) 100
Total energy: -12711.0 ( -169.48 by residue)
QMean score : -0.068
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: