Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHATSSDDFSLSSRVALVTGAGRGIGRGIALALARAGADVAVADLDPQVAEETAAAIRSLGRRSLALGVDVSDGDSVRAMVERVATEFGRLDVAVNNAGVISIRKVAELSLADWDRVMNVNARGVFLCCQAELPLMQAQRWGRIVNLSSIAGKVGLPDLAHYCASKFAVIGFSNALAKEVARDGVTVNALCPGIVGTGMWRGEDGLSGRWRQAGESEAQSWERHQASLLPQGEAQTVEDMGQLVVYLA--CAPHVTGQAIAVDGGFSL
4J2H Chain:A ((6-253))
------PIFDLSGRRALVTGASRGIGQSIAVALAEAGAHVAVTARTVEGLAETRALIEKTGRRAVALAQDVRDVEACASVTRAAAEGLGGLDILVNNAGFENVRPSFDVDEALWDTIVSTNLKGAFFCAQAAGRIMADANGGAIVNLCSLTSYVGIPTAVPYGASKSGLLGVTRALATEWAAHNIRVNAIAPGYFRTAM------------TAGFYEDEDWQSRMLEKIPQRRFGKESDIGGVAVFLCSDAAAYITGHCIPADGGY--
General information:
TITO was launched using:
RESULT:
Template:
4J2H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176799 for 2149 contacts (-82.3/contact) +
2D Compatibility (PS) -26722 + (NN) -13498 + (LL) 812
1D Compatibility (HY) -14000 + (ID) 5000
Total energy: -235207.0 ( -109.45 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4J2H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J2H-query.scw
PDB file :
Tito_Scwrl_4J2H.pdb
: