Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MNLLKSLAAVSSITMLSRVLGFVRDTILARIFGAGLATDAFFVA-FKLPNLLRRIFAEGAFSQAFVPILAEYKNQQGEEATRTFIAYVSGLL--TLVLALVTALGILAAPWVIWVTAPGFADTPEKFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVAMIGFALFLTPYFDPPVM--VLGWAVLAGGLLQLLYQLPHLRKIGMLVLPRLNLRDS-GVWRVMKLMLPAILGVSVSQISLIINTIFASFLAAGSVSWMYYADRLMELPSGVLGVALGTILLPMLAKTYSNKDRHEYSRLLDWGLRLCFLLVLPCSLALAILAEPLTVSLFQYGKFTTVDAAMTQRALVAYSVGLLGIILVKV-LAPGFYAQQNIRTPVKIALFTLVSTQLMNLAFIGPLQHAGLALSIGLAACLNAGLLYWQLRKQRLYLPQPGWAKFLVKLVVAVLAMSAVLLATMHWLPAWEQGAMLERFLRLGLLVVAGLLAYFGMLALLGFRLRDFSRRAVL------- |
| 4GA6 Chain:A ((1-493)) | MKAKIRILDMFSGRYTVLINEEDAKEAKLHPDDLVKIEAGKKAVYGSVALSNLVGKGEVGISRDVLDLHNFSEGETVSVIPAGTPESVRYIKKKMHGEKLRKVEIEAIVRDIVDRKLRDIEISSFVTALEING------LDMDEIAALTIAMAETGDMLDIDRKPI--MDVHSIGG----------VPGNKTNILVVPIVAAAGLTIPKTSSRAITSAAGTADVVEVFADVSFSLDEIKRIVEKVGACLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGS------QYVLIDIPTGK-GVKVET----------VEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGPGSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILE--------SGKAWEKMKEIIEAQGGDPNIKPEEIPIGD------KTYTFTAATSGYVTAIDNRAITAIARAAGAPE--------DKGAGIELYVKVGEKVKEGD-PLFTIHAEHEARLDQAIVLARRTEPIRIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -439807 for 4060 contacts (-108.3/contact) +
2D Compatibility (PS) -45380 + (NN) 13375 + (LL) 6796
1D Compatibility (HY) -2000 + (ID) 4100
Total energy: -471116.0 ( -116.04 by residue)
QMean score : 0.217
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