Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGLPMNLIWFRCDLRTTDNSALLAAADGRPCLALYLLSPAQWREHDDAPCKVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDPSSLGLFAGVDYPRPMVDLKASRERALAAFRNLPPRDGRA |
| 2J09 Chain:A ((5-390)) | -------LVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRL-KAKAVYALTSHTPYGRYRD-------GRVRE-ALPVPLHLLPAPHLLPPDLPRA---YRVYTPFSRLYRGAAPPLPPPEALPKGPE------EGEIPREDPGLPLPE--------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPR------LAAWEAERRGGE-GARKWVAELLWRDFSYHLLYHFPWMA-ERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE--------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J09.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125028 for 3301 contacts (-37.9/contact) +
2D Compatibility (PS) -41109 + (NN) -12663 + (LL) 4760
1D Compatibility (HY) -21200 + (ID) 7450
Total energy: -202690.0 ( -61.40 by residue)
QMean score : 0.430
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