Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1RAO Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
1RAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113480 for 1140 contacts (-99.5/contact) +
2D Compatibility (PS) -16233 + (NN) -6626 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -156257.0 ( -137.07 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_1RAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RAO-query.scw
PDB file :
Tito_Scwrl_1RAO.pdb
: