Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR
1U8A Chain:A ((6-166))
----VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGG--VRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL------
General information:
TITO was launched using:
RESULT:
Template:
1U8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87120 for 1269 contacts (-68.7/contact) +
2D Compatibility (PS) -17484 + (NN) -6888 + (LL) 780
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: -124412.0 ( -98.04 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1U8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8A-query.scw
PDB file :
Tito_Scwrl_1U8A.pdb
: