Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTTLARPYAKAAFEYAQAHQQLADWSAALGVLAAVSQDDTVRQLLKEPQLTSSAKAQSLIDVCGDKLNAPAQNFVRTVAENKRLELLPTIAEMYEQLKAEQEKSVEVEVTSAFTLSKEQQDKLAKALSARLSREVRLHASEDASLIGGVIIRA--GDLVIDGSVRGKLAKLAEALKS
2DM9 Chain:A ((137-189))
-----------------------------------------------------------------------------------------------------------------------------RIEEIKSELG-DVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR-
General information:
TITO was launched using:
RESULT:
Template:
2DM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10944 for 222 contacts (-49.3/contact) +
2D Compatibility (PS) -5480 + (NN) -1470 + (LL) 11328
1D Compatibility (HY) -4400 + (ID) 500
Total energy: -11466.0 ( -51.65 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_2DM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DM9-query.scw
PDB file :
Tito_Scwrl_2DM9.pdb
: