Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEILQNNGITDFTHLSFVELDLSKDEGWKEAMLDCEYVLSVASPVFFGKFKNEEELISPAIEGITRILQAAKEA-KVKRVVMTSNFGAIGFSNA-DKNSITTEAYWTDELAKGLSAYEKSKLIAEKEAWKFMENETELEFATINPVAIFGPSQSNHVSGSFDLLKNLLNGS-MKRV-------INIPLNVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVDKMPKKTLPNAAIRAAALFSKHAKEGELMINMNRQISNSKARDVLGWKP-ISTKEEAVLAAVDSLAKYGLLD |
| 2RH8 Chain:A ((9-336)) | -KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQK-KVSHLLEL--QELGDLKIFRADLTDELSFEAPIAGCDFVFHVATPVHF---------IKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDI--PPTWGYPASKTLAEKAAWKFAEE-NNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESA-SGRYIC-CAANTSVPELAKFLSKRYPQYK--VPTDFG-D--------FP----P-----KSKLIISSEKLVK-EGFSFKYGIEE-IYDESVEYFKAKGLL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RH8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164108 for 2606 contacts (-63.0/contact) +
2D Compatibility (PS) -32666 + (NN) -9392 + (LL) 3220
1D Compatibility (HY) -18400 + (ID) 4400
Total energy: -225746.0 ( -86.63 by residue)
QMean score : 0.510
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