Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK
4V1G Chain:A ((8-84))
---LITAGALIGGGLIMGGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPG-
General information:
TITO was launched using:
RESULT:
Template:
4V1G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40180 for 449 contacts (-89.5/contact) +
2D Compatibility (PS) -7686 + (NN) 145 + (LL) 56
1D Compatibility (HY) -11600 + (ID) 3550
Total energy: -62815.0 ( -139.90 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_4V1G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V1G-query.scw
PDB file :
Tito_Scwrl_4V1G.pdb
: