Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLDTQQIKEIIPHRYPFLLVDRITEVEEGKRAKGYKNVTANEEFFNGHFPQYPVMPGVLIVEALAQVGAVAMLIK------EENRGRLAFFAGIDNCRFKKQVKPGDQLHLEVEIIRARGTIGRGKGVATVDGEVVCEVELTFALGE
3CF9 Chain:D ((15-157))----EHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE


General information:
TITO was launched using:
RESULT:

Template: 3CF9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 634 -38878 -61.32 -283.78
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain D : 0.83

3D Compatibility (PKB) : -61.32
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.548

(partial model without unconserved sides chains):
PDB file : Tito_3CF9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3CF9-query.scw
PDB file : Tito_Scwrl_3CF9.pdb: