Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSACSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHPNYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYKGDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN
4K60 Chain:A ((1-226))
---------------------IIGGTECKPHSRPYMAYLEIVT-NGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQGIVSYGRSDAKPPAVFTRISHYQPWINQILQAN
General information:
TITO was launched using:
RESULT:
Template:
4K60.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155741 for 1849 contacts (-84.2/contact) +
2D Compatibility (PS) -23557 + (NN) -7065 + (LL) 1936
1D Compatibility (HY) -20800 + (ID) 8100
Total energy: -213327.0 ( -115.37 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_4K60.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K60-query.scw
PDB file :
Tito_Scwrl_4K60.pdb
: