Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDQSNYSSLHGFILLGFSNHPKMEMILSGVVAIFYLITLVG---NTAIILASLLDSQLHTPMYFFLRNLSFLDL-----CFTTSIIPQML-VNLWGPDKTISYVGCIIQLYVYMWLGSVECLLLAVMSYDRFTAICKPLHYFVVMNPHLCLKMIIMIWSISLANSVVLCTLTLNLPTCGNNILDHFLCELPALVKIACV-------DTTTVEMSVFALGIIIVLTPLILILISYGYIAKAVLRTKSKASQRKAMNTCGSHLTVVSM--------------FYGTIIYMYLQPGNRASKDQGK-FLTL--FYTVITPSLNPLIYTLRNKDMKDALKKLMRFHHKSTKIKRNCKS |
2HPY Chain:A ((40-318)) | --------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP------TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV--KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS----DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTT |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HPY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200348 for 1786 contacts (-112.2/contact) +
2D Compatibility (PS) -24333 + (NN) -40 + (LL) 3504
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -225467.0 ( -126.24 by residue)
QMean score : 0.121
|
|
|