Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLNQLIPCLSYVQGQATQPAQSCCSGLKSIAG-----S--NPACLCSLISANAGSIPGINSTLALELPAKCNLQGLNPSLCSVFISGFLPLR
1SIY Chain:A ((2-78))
-----TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAAGAVRGINPNNAEALPGKCGVNIP----------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37755 for 492 contacts (-76.7/contact) +
2D Compatibility (PS) -6999 + (NN) -1980 + (LL) 1384
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -51300.0 ( -104.27 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: