Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFEIFTQDFFI--------------------------------NSLIAIVIISLVTGALGSFMIW---------QRLSYLGDSLSHSSLLGIALALIFKISPSISIMLI------AIVFAILLSLNFNRLYSVDTI----LNIVTNVVLSSSLILMSFLPSSNSSIISSLFGNILTLEQSDIVLISLTSIVVVL--------ILIFRWRYWLIIS--INQDLAIVEKVNVNLVRLEFLITL--AIFIAVSAQLIGILLIAAFLLIPAASSRLISKTPMQMIIVATVFSLISGISGLILSASFDLLTGPAIILTATTYLIIAYFIRLMLNRLA |
| 1V04 Chain:A ((16-355)) | LFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDLEILPNGLAFISSGLKYDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKALYCDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -396997 for 2013 contacts (-197.2/contact) +
2D Compatibility (PS) -29279 + (NN) 756 + (LL) 0
1D Compatibility (HY) -6000 + (ID) 1800
Total energy: -433320.0 ( -215.26 by residue)
QMean score : 0.078
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