Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEARNLILAAILSILIIVSWRIIYDNFLNAEQDHPLIENIEHIESFNDLAPVIHQSRSEIINSTREQRINLTNNMVKGSISLKGARFDDLILTNYCLEPDPSSPQVVLLSPAESKDVYFAEFGWLDPNG-KTKVPDSKTFWQAEKT-ELT----NQKAVNLFWNNENGIVFRMKVSLD-NNYMFKVEQIVENNTKDNVVLVPYGKINRKRD-NI--NESYWISHEGILGAFD-NKLEEWTYKNVAKKHLIKASTSKKNWFGFADKYWLTAIIPEKFDKTNVSIKHTNANNVDKFQVDFVKPYKNILPGTSASNVNYFFAGAKKLNLLDYYKSTLNIPLFDKAVDFGVLYFITKPVFLLLEYFNFVLKNFGLAILLLTLVIKLLMLPLSNRSYVSMFKMKSLQPEVARIKELYKNDSLKQHKETIALFKKNNVNPMSSILPILVQIPVFFALYKVLFVTIEMRHAPFCLWIKDLSTSDPTNIFTLFGLFNYNFPISIGILPIILGITMIIQQKIGEKGQTNKDDIQANVMKFFPYISIFIFSSFPAGLVIYWIFSNVITLIQQSLIKLFLTRKLGINVENTNS |
| 3BLC Chain:A ((57-346)) | -----------------------------------------------------------------QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNS-TQPFQLLETSP-QFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHL------TFRGAAYSTPDAAYAAYAFDTIADN-ENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTAN--L-GNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVA-----PHLDLTVDYGWLWFISQPLLVPRGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BLC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5551 for 2068 contacts (2.7/contact) +
2D Compatibility (PS) -27707 + (NN) 917 + (LL) 25816
1D Compatibility (HY) 6800 + (ID) 1200
Total energy: 10177.0 ( 4.92 by residue)
QMean score : 0.200
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