Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWMA---------------GM-LYLPRLYVYHATVKPGSESDSLLQTMERRFLRYI-INPAMLFSL----SFGIA-LMIIREAYREGWFHVKALALFFMFGIHGLLAMHRKKFAMGSNEKNHVYFRVLNEMVTVLIIIIVIMIVVKPF
3OMD Chain:A ((-4-140))
----GDLTKQFPRSPVDRLGGMDHLKRVIDKARAHVAGTLGEYTYNPLDQAFFSFFGLDHEKFAEAVKSRPQDQDMLAWVHSQSPRSKNPKEVESFNREYESRSPDSPEKWDYFRSVRDSLAPGRTDITTWVKLLDLE-----EKRPV
General information:
TITO was launched using:
RESULT:
Template:
3OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61374 for 719 contacts (-85.4/contact) +
2D Compatibility (PS) -11641 + (NN) 751 + (LL) 1728
1D Compatibility (HY) 8800 + (ID) 300
Total energy: -62036.0 ( -86.28 by residue)
QMean score : -0.091
(partial model without unconserved sides chains):
PDB file :
Tito_3OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OMD-query.scw
PDB file :
Tito_Scwrl_3OMD.pdb
: