Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGQVLSNDDWNRYKKEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAAA----LRKVYDQM--ADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI
1D8C Chain:A ((581-690))
----VAENANWSAQEIQQELDNNVQGILGYVVRWVEQ--------GIGCSKVPDIHNVALMEDR----ATLRISSQHIANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKES----------------
General information:
TITO was launched using:
RESULT:
Template:
1D8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37496 for 664 contacts (-56.5/contact) +
2D Compatibility (PS) -11120 + (NN) -1298 + (LL) 1600
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -52514.0 ( -79.09 by residue)
QMean score : 0.086
(partial model without unconserved sides chains):
PDB file :
Tito_1D8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8C-query.scw
PDB file :
Tito_Scwrl_1D8C.pdb
: