Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MECKLVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPYSQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVIILNNLNINVKKTSEMCKYIQNFKFSS---FLIVGDYEDSLLRAARNLHYVNLIKPIGLNVFDILNHECIMLTSDALRYLEGRLL
3CF5 Chain:C ((25-193))
-----------------------------GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENT-RRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE---
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80531 for 1100 contacts (-73.2/contact) +
2D Compatibility (PS) -17429 + (NN) -3192 + (LL) 2516
1D Compatibility (HY) -11200 + (ID) 3150
Total energy: -112986.0 ( -102.71 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: