Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKF---DSTKGIGRTSSN-SYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDL---KYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYP----ALVRSGFNPEFLTYLSNEK--SNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG |
3M4E Chain:A ((13-254)) | -----------------------------------------------------------------DIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYS-EEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYNSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDK-KVGWKVIFNNMVNQNWG--PYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRD----------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M4E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6326 for 1436 contacts (4.4/contact) +
2D Compatibility (PS) -23859 + (NN) -3851 + (LL) 6444
1D Compatibility (HY) -16000 + (ID) 3400
Total energy: -34340.0 ( -23.91 by residue)
QMean score : 0.327
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