Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLN--QPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
4DUY Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEY--FQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DUY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22814 for 869 contacts (-26.3/contact) +
2D Compatibility (PS) -13206 + (NN) -3382 + (LL) 700
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -50302.0 ( -57.88 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4DUY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUY-query.scw
PDB file :
Tito_Scwrl_4DUY.pdb
: