Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVVLHSHLENALNQLKELIDLTERDIRDIKLAKHAEIFERNHQKQLAIQAFEQEKTNIDAQMLSLKN-----------QFPNKEMSELLDEKTSDFLNQMREFLLVLKEKNLIYSRMAFAVSEFYSSLIQQIIPHDTCDYKGSRHVGSHFLRVQA |
1RT6 Chain:A ((450-530)) | --------------------------RETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE-QLIKKEKVYLAWVPAH------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RT6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 35986 for 404 contacts (89.1/contact) +
2D Compatibility (PS) -6880 + (NN) 3445 + (LL) 5368
1D Compatibility (HY) 4800 + (ID) 300
Total energy: 42419.0 ( 105.00 by residue)
QMean score : -0.112
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