Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKALMFTLLGVSLAFATPYTIDKANSSVWYEVKHFTFNETRGAFDNFDGKIDLEPNTKVLSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTK----YED--------GKIHGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQA--EGKINRKDFGIGKTFS-------NAVVGDEVKIEIKLEAYAQ
3Q34 Chain:A ((4-175))
-----------------ANWYLDNESSRLSFTSTKNADIAEVHRFLVLHGKVDPK------GLAEVEVETESISTGIPLRDERLR-EQVFQVHKFPVAQINAQLDMRPINNLAPGAQLELRLPLTVSLRGKSHSYNAELLATRLDE------RRFQVVTLEPLVIHAQDFDMVSDFNALRNAAGLSAVSLSVPVGAVLIFTAR
General information:
TITO was launched using:
RESULT:
Template:
3Q34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29446 for 1083 contacts (-27.2/contact) +
2D Compatibility (PS) -15456 + (NN) 6581 + (LL) 2340
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -42181.0 ( -38.95 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_3Q34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q34-query.scw
PDB file :
Tito_Scwrl_3Q34.pdb
: