Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKRLSDWEYQWAVA------LVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVG---LIAALLSN------LLFDPRGRDCYKSFQVRYPRFLKAI-FKARFFGAFYNAVLGSRLRDFYVMLLTMPFI-AAIHEISAYCGHPSNFLVEGLVMLGLV-CVFGICSRLCAKLGW
5DGG Chain:A ((3-184))
---RDQMQDHDMTLLMPKSQGRIVVMAVLNRYDSHSANAIIETLASDVFNPEVHYIMIPVGPGHWRGVYLSKPTAYDLELFDPYGPEGAAVLDDYVLDLLNQCGVPKELVNIRHTGPKHPQGDAYSCGDFTCAYSHKKMKEFGAPEGSYNPILIDTLDNLGNEDNVLRMTTREETRALV
General information:
TITO was launched using:
RESULT:
Template:
5DGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177470 for 1189 contacts (-149.3/contact) +
2D Compatibility (PS) -16448 + (NN) 495 + (LL) 332
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -200841.0 ( -168.92 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_5DGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DGG-query.scw
PDB file :
Tito_Scwrl_5DGG.pdb
: