Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KPSKEVKTG--DVISLHYLKGIEEYTILQIPTLKNVPRKDTHLYIAPKTKE
2CQJ Chain:A ((109-165))
RRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSK------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38761 for 343 contacts (-113.0/contact) +
2D Compatibility (PS) -5547 + (NN) 1423 + (LL) 2328
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -43357.0 ( -126.41 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2CQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CQJ-query.scw
PDB file :
Tito_Scwrl_2CQJ.pdb
: