Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDE-KVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR
4EM8 Chain:A ((4-143))
-RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSF--GVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGGRHAVRVQKLGE------
General information:
TITO was launched using:
RESULT:
Template:
4EM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94704 for 1147 contacts (-82.6/contact) +
2D Compatibility (PS) -15242 + (NN) -6528 + (LL) 564
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -128860.0 ( -112.35 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4EM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM8-query.scw
PDB file :
Tito_Scwrl_4EM8.pdb
: