Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATK-AENKMW-RIK--------SDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNAD------------APLET-----TIKG----MKTVLLGYDCRMSQQS-P----------AYLERIVKDVKKYK-KEDTLVIVNMHWGVEYRETPT--DYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
| 3JYF Chain:A ((5-251)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------ATVDLRIMETTDLHSNMMDFDY--------YKD-AATEKFGLVRTASLIEQARA--EVKNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYKAMNTLNYAVGNLG-NHEFNYGLDFLHKALAG---AKFPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQIHTLRIGYIGFVPPQIMTWDKANLNGKVTVNDITETARKYIPEMRAKGADVVVVVAHSGLSADPYQAMAENSVYYLSQ--VPGVDAIMFGHAHAVFPGKD---------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26487 for 1564 contacts (-16.9/contact) +
2D Compatibility (PS) -21649 + (NN) -9952 + (LL) 17480
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -47158.0 ( -30.15 by residue)
QMean score : 0.226
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