Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKMLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMPLVGVLLGGLDFTDLSFKVGKSVIQYGAFIQSIVDFIIIAFAIFIFVKVLTSFIKKKEQTVEETPVPPTEEYLKEIRDLLKEQQK
4HTT Chain:A ((123-175))
----------------------------------------IVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30699 for 232 contacts (-132.3/contact) +
2D Compatibility (PS) -5338 + (NN) 534 + (LL) 6464
1D Compatibility (HY) -6400 + (ID) 1000
Total energy: -36439.0 ( -157.06 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_4HTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HTT-query.scw
PDB file :
Tito_Scwrl_4HTT.pdb
: