Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKLLVPALNCLLGLLFLGDHWFLFRLQNGELFAIVTLILLCTTSFLINKNHPKNLTLISMIITFLAVLSFLSTFLLA
2VQE Chain:U ((2-25))
-----------------GKGDR----RTRRGKIW-----------RGTYGKYRPRKK----------------------
General information:
TITO was launched using:
RESULT:
Template:
2VQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3443 for 121 contacts (28.5/contact) +
2D Compatibility (PS) -2532 + (NN) -1022 + (LL) 6608
1D Compatibility (HY) 800 + (ID) 300
Total energy: 6997.0 ( 57.83 by residue)
QMean score : -0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2VQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQE-query.scw
PDB file :
Tito_Scwrl_2VQE.pdb
: