Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTYQK-DGKFKGYDVDVVKAVFKGSKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVK---DQSLNLSVSPLKGKIGNNKDGLEYLLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
4LA9 Chain:A ((29-250)) | -----------------------AETTV--KIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAV----GAKNGTAAQTWLQENQKKYGYTIKTYSDGVHMFAAL---SSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYG---------FAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LA9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46238 for 1751 contacts (-26.4/contact) +
2D Compatibility (PS) -23359 + (NN) -6777 + (LL) 3964
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -86810.0 ( -49.58 by residue)
QMean score : 0.405
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