Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIWSHLFAIVSI-LGIWYYHVKIDHLMVILLASVLSLEMGFIAYYSRNIFIRLLASLGLLFFYPQSLGIFLSLVSLEWSTKDIWQSNHFMQYMAYLLAILFIISSALLSLKLLVNAYDISKRYQLATVIPV-MLFSSFAFCLEKSGSLGLEGIILNPSAFFNGIQTNMANLDFKALSCLFLVQLLLWGILMED------
4P6V Chain:D ((7-208))
LKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALS-NFFVSLIRNV--------RIIVQMAIIASLVIVVDQILKDISKQLSVFVGLII---TNCIVMGRAEAFAPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVLPN-----------GLMLLAPSAFFLIGFMIWAIRTFKPEQVEA
General information:
TITO was launched using:
RESULT:
Template:
4P6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157359 for 1313 contacts (-119.8/contact) +
2D Compatibility (PS) -18264 + (NN) -9392 + (LL) 1960
1D Compatibility (HY) -11600 + (ID) 1550
Total energy: -196205.0 ( -149.43 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_4P6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P6V-query.scw
PDB file :
Tito_Scwrl_4P6V.pdb
: